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14 Apr 2017 ... The functions or variables listed here are no longer part of GOstats as they ... children down to the root node for the ontology. ... Given the result of a hyperGTest run (an instance of GOHyperGResult), this function lists all Probe.
23 Aug 2006 ... The functions or variables listed here are no longer part of GOstats as they ... children down to the root node for the ontology. ... Given the result of a hyperGTest run (an instance of GOHyperGResult), this function lists all Probe.
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17 Mar 2009 ... Hi Sebastien, The source of your confusion on this is the fact that not every gene ... After GOstats gets finished paring down the gene universe it ...
I started by using hyperGTest of package GOstats to calculate p-value for different GO terms. ... 1 cause wanted to get p-values for all terms, even those that were not significant. ... C: Gene ontology comparsion between up- and down-regulated genes ... I'm trying to run a hyperGTest from GOstats (bioconductor) package on ...
... or 2 node graphs (unless they are relevant). It is not clear, how you known if it is relevant this node or not, and should probably be another separate question.
19 Apr 2020 ... The R package GOstats 48 was not certified by peer review) is the ... The GOslim of the plant-specific condensed version of the GO was run for ...