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not able to install bioconductor packages - Bioconductor Support

biocLite("airway") BioC_mirror: https://bioconductor.org Using Bioconductor 3.4 (BiocInstaller 1.24.0), ... installation of package 'airway' had non-zero exit status.

Bioconductor 3.8 Released - Bioconductor

31 Oct 2018 ... Visit https://bioconductor.org for details and downloads. ... has a rich ecosystem of metadata around packages, usage, and build status.

edgeR - Bioconductor

1 Jun 2020 ... counts directly, as the latter does not account for differences in library sizes between samples. Here is a simple ... As a result, the library size will be scaled down, analogous ... This produces a matrix of log2 counts-per-million ... M.A., Paulovich, A., Pomeroy, S.L., Golub, T.R., Lander, E.S., and Mesirov, J.P..

Dashboard - Bioconductor

Build System Status ... FScanR: an R package to detect Programmed Ribosomal Frameshifting (PRF) events from mRNA/ ... http://bioconductor.org/, yes, yes.

Developers - Bioconductor

Bioconductor is an open development project, meaning that all developers from ... concerns, please contact us at email: bioc-devel NEAR r-project POINT org ...

BiocPkgTools - Bioconductor

Bioconductor has a rich ecosystem of metadata around packages, usage, and build status. ... Packages. R package version 1.6.0, https://github.com/seandavi/BiocPkgTools. ... Source Repository, git clone https://git.bioconductor.org/packages/ ...

scoreInvHap - Bioconductor

scoreInvHap can get the samples' inversion status of known inversions. ... Maintainer: Carlos Ruiz <carlos.ruiz at isglobal.org> ... R package version 1.10.0.

Packages: End-of-life - Bioconductor

23 Mar 2020 ... When a package has gone through one development cycle as 'deprecated' ... un-deprecated, please contact [email protected].

3.11 Software Packages - Bioconductor

annotate, Bioconductor Package Maintainer, Annotation for microarrays ... cbaf, Arman Shahrisa, Automated functions for comparing various omic data from cbioportal.org ... scoreInvHap, Carlos Ruiz, Get inversion status in predefined regions.

Package guidelines - Bioconductor

Depending on the R release cycle, using Bioconductor devel may or may not ... by default will have commit access to the git repository on git.bioconductor.org. ... In our experience it only slows down the loading of packages with large data.

Unit Testing - Bioconductor

They may be scattered across different files, or they may not exist as ... which you choose to use for your package largely comes down to personal preference.

Package 'GOstats' - Bioconductor

23 Aug 2006 ... The functions or variables listed here are no longer part of GOstats as they ... children down to the root node for the ontology. ... Given the result of a hyperGTest run (an instance of GOHyperGResult), this function lists all Probe.

Analyzing RNA-seq data with DESeq2 - Bioconductor

12 May 2020 ... With no additional arguments to results, the log2 fold change and ... out of the window are plotted as open triangles pointing either up or down.

Installing and Managing Bioconductor Packages - CRAN

With the update, the version of Bioconductor indicated by BiocVersion is no longer valid – you'll need to ... Off-line use generally requires the following steps.

Accessing Ensembl annotation with biomaRt - Bioconductor

5 Jul 2020 ... Note: Unfortunately there is no BioMart interface to the Ensembl Bacteria data. ... From the main page scroll down the bottom of the page, click on ... 1 ## 50 rs1219544655 A/G 148487 1 ## 51 rs1344406365 CTCT/CT 148495 ...

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