SAMtools. SourceForge.net Logo, Github Logo ... SAM Tools provide various utilities for manipulating alignments in the SAM ... SAMtools is hosted by GitHub.
18 Jul 2018 ... SAMtools provide efficient utilities on… ... #846 reported by Dianne Velasco) - Fixed compilation problems when using C_INCLUDE_PATH.
samtools quickcheck will now write a warning to stderr if it finds any problems. These messages can be suppressed with a new `-q` option. * samtools markdup ...
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[Tue Jul 03 00:22:30 CDT 2012] net.sf.picard.sam.ValidateSamFile done. Elapsed time: 12.89 minutes. Next, I use the FixMateInformation to fix the problem, the ...
21 Dec 2016 ... Samtools is also able to open a BAM (not SAM) file on a remote FTP or HTTP server if the BAM file name ... http://samtools.sourceforge.net
6 Dec 2019 ... Samtools is also able to open a BAM (not SAM) file on a remote FTP or ... Each category in the output is broken down into QC pass and QC fail, ...
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17 Jul 2014 ... Hi Yibo, First of all, FYI this is a stack trace: Exception in thread "main" net.sf.samtools.SAMException: Exception when processing alignment for ...
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Also using another make.exe (I tried with a GNU Make 3.82 Built for i686-w64-mingw32) the commands were executed without problems.
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